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Not syncing properly, database error

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I have the issue that Syncthing reports my folders in sync even though they are gravely out of sync. I suspected something might be wrongly ignored/incompletely indexed, so I queried the API and received an error:

❯ synct 'db/browse?folder=data&levels=3'
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100    96  100    96    0     0    387      0 --:--:-- --:--:-- --:--:--   387
   1 could not find child 'chores' for path '1-projects/falcon/chores/.gitignore' in parent 'falcon'

Where synct is a little helper to curl the API.

What is this error?

Note that the chores folder has been deleted on another machine, which I can also see in the index if I query only 2 levels deep.

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